PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_8688F70C9.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 299aa    MW: 31071.2 Da    PI: 10.6217
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_8688F70C9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.8e-31234291359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D y+WrKYGqK++kgs++pr YYrC++a gCp++k+ver+++dp ++++tYeg+H+h+
  Traes_5BL_8688F70C9.1 234 DDYSWRKYGQKPIKGSPYPRCYYRCSTAkGCPARKHVERATDDPAMLIVTYEGDHRHD 291
                            99***********************9998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-16188230IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-32220292IPR003657WRKY domain
PROSITE profilePS5081131.135227293IPR003657WRKY domain
SuperFamilySSF1182904.58E-27227292IPR003657WRKY domain
SMARTSM007745.6E-37232292IPR003657WRKY domain
PfamPF031065.7E-27234290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAVDFVGRGH APRGLALAGG QQQLAFHEAA AAGLSSLELL VSALSPRADC APPPLGEIAD  60
QALSGFRRVI DILGRTGHAR FRRGPVGGGA ASLTPPPVSS PPRMPARPPA PAASQQLAPQ  120
KSLTLDFTKP SKTPAAAAAA SVTSTSFFSS VTAGGEGSVS KGPSQLVSSG KPPLAAGTKR  180
KQQQQQTPCA SAAHSDAAAA AGGRCHCSKK RKHRVKYTTR VPAVSSRTAD IPGDDYSWRK  240
YGQKPIKGSP YPRCYYRCST AKGCPARKHV ERATDDPAML IVTYEGDHRH DTLPPAAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22219296176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571564.12e-86PREDICTED: probable WRKY transcription factor 17
SwissprotQ9SV153e-80WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLW5FE940.0W5FE94_WHEAT; Uncharacterized protein
STRINGMLOC_66612.11e-155(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-59WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]